University of Manchester
Download file
Download file
Download file
Download file
Download file
5 files

TriTan: An efficient triple non-negative matrix factorisation method for integrative analysis of single-cell multiomics data

Download all (9.23 GB)
posted on 2023-06-05, 13:28 authored by Xin MaXin Ma
  • Three multiple publicly available single-cell multi-modal (two modalities - RNA and ATAC) datasets of varying sizes to comprehensively benchmark TriTan against other methods and leverage the output from TriTan for extensive downstream analyses. 
  • PBMC-10K: Human peripheral blood mononuclear cells of 10X Multiome from( .  pbmc10k.h5mu : .h5mu data with two modalities; PBMC-10K-celltype.txt: ground truth cell type labels.
  • Bone marrow mononuclear cells (NeurIPS 2021 ) of 10X Multiome from GSE194122. contains prepocessed .h5mu data as well as ground truth.
  • Mouse skin cells using SHARE-seq protocol from GSM4156597. The .zip data contains prepocessed and unprepossed scRNA-seq and scATAC-seq data.;  GSM4156597_skin_celltype.txt:ground truth cell type labels.


Usage metrics

    School of Health Sciences