DATASET
Figure 1 - cell responses & lmax.xlsx (2.77 MB)
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Opsin_Fit-README.md (4.78 kB)
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opsin-receptor-fitting-analysis.Rproj (0.21 kB)
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1.extract_and_transform.R (2.79 kB)
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2.fitting_procedure.R (2.66 kB)
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3.fig_bootstrap_results.R (2.74 kB)
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4.fig_RSS_per_lmax.R (5.15 kB)
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5.sigmoid_fits_plots.R (4.75 kB)
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calc_sum_log_photons_gov.R (1.6 kB)
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create_govardovskii_template.R (0.86 kB)
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lmax_based_5p_fitting.R (1.67 kB)
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power_to_photons.R (0.35 kB)
DATASET
responses.xlsx (18.58 kB)
DATASET
spectra.xlsx (323.56 kB)
TEXT
Figure 2 - ReadMe.txt (1.04 kB)
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plotsspecs.m (1.26 kB)
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plotvalidation.m (2.34 kB)
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calculateerrors.m (4.21 kB)
.MAT
calibration.mat (4.64 kB)
.MAT
validation.mat (633.77 kB)
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Research data and scripts for manuscript "Beyond Lux: Methods for Species and Photoreceptor-Specific Quantification of Ambient Light for Mammals"
Version 2 2024-10-04, 15:51
Version 1 2023-10-23, 15:22
journal contribution
posted on 2024-10-04, 15:51 authored by Richard McdowellRichard Mcdowell, Altug DidikogluAltug Didikoglu, Tom WoeldersTom Woelders, Mazie Gatt, Saba Notash, Finn Moffat, Roelof Hut, Timothy M. Brown, Robert J LucasThese files contain the raw data, analysis and scripts used to create the figures for the paper: Beyond Lux: Methods for Species and Photoreceptor-Specific Quantification of Ambient Light for Mammals
Figure 1 Data - Mammalian melanopsin spectral sensitivities
Raw & normalised cell response data:
- Figure 1 - cell responses & lmax.xlsx
lmax fitting script:
- Opsin_Fit-README.md
- opsin-receptor-fitting-analysis.Rproj
- 1.extract_and_transform.R
- 2.fitting_procedure.R
- 3.fig_bootstrap_results.R
- 4.fig_RSS_per_lmax.R
- 5.sigmoind_fits_plots.R
- calc_sum_log_photons_gov.R
- create_govardovskii_template.R
- lmax_based_5p_fitting.R
- power_to_photons.R
- responses.xlsx
- spectra.xlsx
Figure 2 Data - Cross-species light dosimeter validation
- Figure 2 - ReadMe.txt
Functions:
- plotspecs.m
- plotvalidation.m
- calculateerrors.m
Workspaces (Used by functions above):
- calibration.mat
- validation.mat
Figure 3 Data - Irradiance response curves for circadian phase shifting in C57 wild-type mouse
- Figure 3 - raw data.xlsx
Figure 4 Data - Cross-species α-opic EDIs across different light sources
- Figure 4 - raw data.xlsx
- Figure 4 - SolarAngle.R
- Figure 4 - SolarAngle.Rdata
Supplementary Figure 1 - Pre-Receptoral Filtering Data
- Pre_R_Filter-Cornea-1-Norm_cornea_trans_data.csv
- Pre_R_Filter-Cornea-2-Transf_Norm_Spline_Norm_cornea_trans_data.csv
- Pre_R_Filter-Cornea-2-Transf_Norm_SplineCubic_Norm_cornea_trans_data.csv
- Pre_R_Filter-Cornea-3-cornea.trans.data.csv
- Pre_R_Filter-Lens-1-Norm_lens_trans_data.csv
- Pre_R_Filter-Lens-2-Transf_Norm_Spline_Norm_lens_trans_data.csv
- Pre_R_Filter-Lens-2-Transf_Norm_SplineCubic_Norm_lens_trans_data.csv
- Pre_R_Filter-Lens-3-lens.trans.data.csv
- Pre_R_Filter-Vitreous-1-Norm_vitreous_trans_data.csv
- Pre_R_Filter-Vitreous-2-Transf_Norm_Spline_Norm_vitreous_trans_data.csv
- Pre_R_Filter-Vitreous-2-Transf_Norm_SplineCubic_Norm_vitreous_trans_data.csv
- Pre_R_Filter-Vitreous-3-vitreous.trans.data.csv
